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GH13_28 GH GH family — see CAZy reference

19
target proteins
17
CGCs
all
tree leaves
2
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh13_28_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH13_28 CGCs.

SSN
.cys
GH13_28_SSN.cys
Full GH13_28 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH13_28 host-group violin

Co-occurring subfamilies first 2 of 2 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH13_28GH19——
AA10AA1——

Downloads

Full SSN (Cytoscape)GH13_28_SSN.cys · 0.0 MB
Newickgh13_28_phylogeny.nwk
MUSCLE alignmentgh13_28_phylogeny.aln.faa
Target proteins (FASTA)gh13_28_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv