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Home · Families · PL · PL1_3

PL1_3 PL PL family — see CAZy reference

3
target proteins
3
CGCs
2
co-occurring families

Overview

ClassPL
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from PL1_3 CGCs.

SSN
.cys
PL1_3_SSN.cys
Full PL1_3 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

PL1_3 host-group violin

Co-occurring subfamilies first 2 of 2 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
PL1_3PL3——
GH16_25GH2——

Downloads

Full SSN (Cytoscape)PL1_3_SSN.cys · 0.0 MB
Target proteins (FASTA)pl1_3_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv