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Home · Families · PL · PL5_1

PL5_1 PL PL family — see CAZy reference

62
target proteins
62
CGCs
all
tree leaves
4
co-occurring families

Overview

ClassPL
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of pl5_1_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.6 MB

Subset of the global SSN restricted to proteins from PL5_1 CGCs.

SSN
.cys
PL5_1_SSN.cys
Full PL5_1 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.6 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

PL5_1 host-group violin

Co-occurring subfamilies first 4 of 4 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
PL5_1PL62——
GT2GT54——
S1_2S14——
AA3_2AA1——

Downloads

Full SSN (Cytoscape)PL5_1_SSN.cys · 0.6 MB
Newickpl5_1_phylogeny.nwk
MUSCLE alignmentpl5_1_phylogeny.aln.faa
Target proteins (FASTA)pl5_1_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv