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Home · Families · GH · GH104

GH104 GH GH family — see CAZy reference

77
target proteins
77
CGCs
all
tree leaves
6
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh104_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.1 MB

Subset of the global SSN restricted to proteins from GH104 CGCs.

SSN
.cys
GH104_SSN.cys
Full GH104 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.1 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH104 host-group violin

Co-occurring subfamilies first 6 of 6 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH104GH77——
S1_2S14——
GT4GT3——
GH5_5GH2——
S1_15S11——
GT2GT1——

Downloads

Full SSN (Cytoscape)GH104_SSN.cys · 0.1 MB
Newickgh104_phylogeny.nwk
MUSCLE alignmentgh104_phylogeny.aln.faa
Target proteins (FASTA)gh104_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv