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Home · Families · GH · GH13_17

GH13_17 GH GH family — see CAZy reference

1
target proteins
1
CGCs
3
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH13_17 CGCs.

SSN
.cys
GH13_17_SSN.cys
Full GH13_17 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH13_17 host-group violin

Co-occurring subfamilies first 3 of 3 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
S1_97S11——
GH37GH1——
GH13_17GH1——

Downloads

Full SSN (Cytoscape)GH13_17_SSN.cys · 0.0 MB
Target proteins (FASTA)gh13_17_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv