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S1_97 S1 S1 family — see CAZy reference
846
target proteins
845
CGCs
999 / 846
tree leaves
174
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_97_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_97 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_97 | S1 | 846 | — | — |
| GT4 | GT | 110 | — | — |
| GT2 | GT | 85 | — | — |
| GT9 | GT | 70 | — | — |
| CE14 | CE | 61 | — | — |
| GT51 | GT | 51 | — | — |
| GT5 | GT | 51 | — | — |
| GH23 | GH | 49 | — | — |
| GH13_9 | GH | 41 | — | — |
| GH31_1 | GH | 39 | — | — |
| GH77 | GH | 35 | — | — |
| S1_4 | S1 | 34 | — | — |
| GT35 | GT | 30 | — | — |
| GH15 | GH | 27 | — | — |
| GH13_3 | GH | 23 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_97_SSN.cys · 14.1 MB |
|---|---|
| Newick | s1_97_phylogeny.max999.nwk |
| MUSCLE alignment | s1_97_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_97_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |