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GH77 GH GH family — see CAZy reference
2,365
target proteins
2,359
CGCs
999 / 2,365
tree leaves
162
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh77_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH77 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH77 | GH | 2,365 | — | — |
| GH13_9 | GH | 837 | — | — |
| GT35 | GT | 757 | — | — |
| GH13_11 | GH | 557 | — | — |
| GT5 | GT | 478 | — | — |
| GH13_10 | GH | 226 | — | — |
| GH57_2 | GH | 200 | — | — |
| GH13_26 | GH | 182 | — | — |
| GH13_16 | GH | 177 | — | — |
| GH13_3 | GH | 136 | — | — |
| GH13 | GH | 122 | — | — |
| GH13_20 | GH | 96 | — | — |
| GH57_6 | GH | 69 | — | — |
| S1_2 | S1 | 66 | — | — |
| GH84 | GH | 36 | — | — |
Downloads
| Full SSN (Cytoscape) | GH77_SSN.cys · 89.0 MB |
|---|---|
| Newick | gh77_phylogeny.max999.nwk |
| MUSCLE alignment | gh77_phylogeny.aln.faa |
| Target proteins (FASTA) | gh77_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |