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GH57_6 GH GH family — see CAZy reference
300
target proteins
300
CGCs
all
tree leaves
49
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh57_6_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH57_6 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH57_6 | GH | 300 | — | — |
| GH13_9 | GH | 85 | — | — |
| GH77 | GH | 69 | — | — |
| GH13_10 | GH | 57 | — | — |
| GH13_26 | GH | 52 | — | — |
| GH13_16 | GH | 37 | — | — |
| GT35 | GT | 34 | — | — |
| GH13_3 | GH | 32 | — | — |
| GT5 | GT | 28 | — | — |
| GT4 | GT | 26 | — | — |
| GT81 | GT | 13 | — | — |
| GT20 | GT | 10 | — | — |
| GH13 | GH | 9 | — | — |
| GH57_1 | GH | 8 | — | — |
| GT2 | GT | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | GH57_6_SSN.cys · 1.9 MB |
|---|---|
| Newick | gh57_6_phylogeny.nwk |
| MUSCLE alignment | gh57_6_phylogeny.aln.faa |
| Target proteins (FASTA) | gh57_6_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |