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GH13_16 GH GH family — see CAZy reference
1,079
target proteins
1,075
CGCs
999 / 1,079
tree leaves
103
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_16_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_16 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_16 | GH | 1,079 | — | — |
| GH13_3 | GH | 493 | — | — |
| GH13_9 | GH | 430 | — | — |
| GH13_11 | GH | 194 | — | — |
| GH13_10 | GH | 188 | — | — |
| GH77 | GH | 179 | — | — |
| GH13_26 | GH | 142 | — | — |
| GT35 | GT | 104 | — | — |
| GH13_23 | GH | 59 | — | — |
| GH13_20 | GH | 57 | — | — |
| GT20 | GT | 53 | — | — |
| GT5 | GT | 51 | — | — |
| GT4 | GT | 45 | — | — |
| GH57_6 | GH | 37 | — | — |
| S1_8 | S1 | 34 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_16_SSN.cys · 37.9 MB |
|---|---|
| Newick | gh13_16_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_16_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_16_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |