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GH13_23 GH GH family — see CAZy reference
2,309
target proteins
2,227
CGCs
999 / 2,309
tree leaves
164
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_23_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_23 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_23 | GH | 2,309 | — | — |
| GH1 | GH | 321 | — | — |
| GH97 | GH | 178 | — | — |
| GH13_2 | GH | 120 | — | — |
| GH13 | GH | 113 | — | — |
| GH15 | GH | 103 | — | — |
| GH13_38 | GH | 101 | — | — |
| GH13_9 | GH | 93 | — | — |
| GH13_11 | GH | 90 | — | — |
| GT5 | GT | 85 | — | — |
| GH13_46 | GH | 80 | — | — |
| GT4 | GT | 75 | — | — |
| GH13_48 | GH | 73 | — | — |
| GH13_13 | GH | 72 | — | — |
| GT35 | GT | 68 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_23_SSN.cys · 123.3 MB |
|---|---|
| Newick | gh13_23_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_23_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_23_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |