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GH1 GH GH family — see CAZy reference
4,170
target proteins
4,065
CGCs
999 / 4,170
tree leaves
317
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH1 | GH | 4,170 | — | — |
| GH13_23 | GH | 321 | — | — |
| GH3 | GH | 305 | — | — |
| GH4 | GH | 128 | — | — |
| GH16_3 | GH | 126 | — | — |
| GH94 | GH | 98 | — | — |
| GH30_1 | GH | 77 | — | — |
| GT2 | GT | 74 | — | — |
| GT4 | GT | 66 | — | — |
| S1_6 | S1 | 59 | — | — |
| GH31_3 | GH | 48 | — | — |
| S1_8 | S1 | 46 | — | — |
| GH149 | GH | 46 | — | — |
| S1_7 | S1 | 45 | — | — |
| S1_2 | S1 | 44 | — | — |
Downloads
| Full SSN (Cytoscape) | GH1_SSN.cys · 176.0 MB |
|---|---|
| Newick | gh1_phylogeny.max999.nwk |
| MUSCLE alignment | gh1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |