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GH31_3 GH GH family — see CAZy reference
419
target proteins
419
CGCs
999 / 419
tree leaves
135
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh31_3_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH31_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH31_3 | GH | 419 | — | — |
| GH3 | GH | 97 | — | — |
| GH42 | GH | 52 | — | — |
| GH95 | GH | 49 | — | — |
| GH1 | GH | 48 | — | — |
| GH2_1 | GH | 35 | — | — |
| GH5_4 | GH | 26 | — | — |
| S1_31 | S1 | 24 | — | — |
| GH29 | GH | 22 | — | — |
| GH97 | GH | 20 | — | — |
| S1_41 | S1 | 17 | — | — |
| CE20 | CE | 13 | — | — |
| S1_8 | S1 | 13 | — | — |
| GH78 | GH | 12 | — | — |
| PL1_2 | PL | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH31_3_SSN.cys · 3.9 MB |
|---|---|
| Newick | gh31_3_phylogeny.max999.nwk |
| MUSCLE alignment | gh31_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh31_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |