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PL1_2 PL PL family — see CAZy reference
634
target proteins
541
CGCs
999 / 634
tree leaves
162
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl1_2_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL1_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL1_2 | PL | 634 | — | — |
| GT4 | GT | 256 | — | — |
| GH28 | GH | 122 | — | — |
| CE8 | CE | 107 | — | — |
| GH105 | GH | 78 | — | — |
| CE12 | CE | 74 | — | — |
| GH78 | GH | 50 | — | — |
| GH43_10 | GH | 44 | — | — |
| GH43_9 | GH | 43 | — | — |
| GH95 | GH | 33 | — | — |
| GT2 | GT | 28 | — | — |
| S1_27 | S1 | 26 | — | — |
| GH140 | GH | 25 | — | — |
| PL10_1 | PL | 24 | — | — |
| GH127 | GH | 24 | — | — |
Downloads
| Full SSN (Cytoscape) | PL1_2_SSN.cys · 6.9 MB |
|---|---|
| Newick | pl1_2_phylogeny.max999.nwk |
| MUSCLE alignment | pl1_2_phylogeny.aln.faa |
| Target proteins (FASTA) | pl1_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |