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S1_27 S1 S1 family — see CAZy reference
1,838
target proteins
1,787
CGCs
999 / 1,838
tree leaves
360
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_27_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_27 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_27 | S1 | 1,838 | — | — |
| GT4 | GT | 777 | — | — |
| GT2 | GT | 269 | — | — |
| GT51 | GT | 194 | — | — |
| GH3 | GH | 121 | — | — |
| PL7 | PL | 98 | — | — |
| GH78 | GH | 95 | — | — |
| PL6 | PL | 88 | — | — |
| GH105 | GH | 80 | — | — |
| PL17_2 | PL | 79 | — | — |
| GH88 | GH | 76 | — | — |
| GH16_3 | GH | 72 | — | — |
| S1_7 | S1 | 65 | — | — |
| S1_8 | S1 | 64 | — | — |
| CE8 | CE | 53 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_27_SSN.cys · 34.5 MB |
|---|---|
| Newick | s1_27_phylogeny.max999.nwk |
| MUSCLE alignment | s1_27_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_27_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |