↵
GH88 GH GH family — see CAZy reference
863
target proteins
859
CGCs
999 / 863
tree leaves
232
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh88_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH88 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH88 | GH | 863 | — | — |
| GH154 | GH | 90 | — | — |
| GH2_2 | GH | 82 | — | — |
| S1_27 | S1 | 81 | — | — |
| GH29 | GH | 65 | — | — |
| PL40 | PL | 64 | — | — |
| PL29 | PL | 57 | — | — |
| S1_7 | S1 | 51 | — | — |
| GH3 | GH | 39 | — | — |
| PL38 | PL | 36 | — | — |
| PL33_2 | PL | 35 | — | — |
| S1_8 | S1 | 32 | — | — |
| S1_15 | S1 | 31 | — | — |
| GH97 | GH | 31 | — | — |
| GH95 | GH | 30 | — | — |
Downloads
| Full SSN (Cytoscape) | GH88_SSN.cys · 9.7 MB |
|---|---|
| Newick | gh88_phylogeny.max999.nwk |
| MUSCLE alignment | gh88_phylogeny.aln.faa |
| Target proteins (FASTA) | gh88_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |