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GH154 GH GH family — see CAZy reference
352
target proteins
346
CGCs
all
tree leaves
164
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh154_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH154 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH154 | GH | 352 | — | — |
| GH88 | GH | 90 | — | — |
| GH105 | GH | 53 | — | — |
| GH2_10 | GH | 39 | — | — |
| PL42 | PL | 30 | — | — |
| GH43_19 | GH | 30 | — | — |
| GT4 | GT | 27 | — | — |
| GH16_3 | GH | 22 | — | — |
| S1_44 | S1 | 22 | — | — |
| S1_27 | S1 | 21 | — | — |
| PL8 | PL | 20 | — | — |
| PL33_2 | PL | 20 | — | — |
| PL33_1 | PL | 19 | — | — |
| GH43_24 | GH | 18 | — | — |
| GT2 | GT | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | GH154_SSN.cys · 1.6 MB |
|---|---|
| Newick | gh154_phylogeny.nwk |
| MUSCLE alignment | gh154_phylogeny.aln.faa |
| Target proteins (FASTA) | gh154_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |