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GH105 GH GH family — see CAZy reference
1,165
target proteins
1,096
CGCs
999 / 1,165
tree leaves
261
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh105_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH105 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH105 | GH | 1,165 | — | — |
| GH28 | GH | 352 | — | — |
| CE12 | CE | 235 | — | — |
| CE8 | CE | 174 | — | — |
| GH106 | GH | 103 | — | — |
| PL1_2 | PL | 99 | — | — |
| GH43_10 | GH | 96 | — | — |
| GH78 | GH | 79 | — | — |
| GT4 | GT | 78 | — | — |
| S1_27 | S1 | 74 | — | — |
| S1_8 | S1 | 72 | — | — |
| GH3 | GH | 65 | — | — |
| GH154 | GH | 53 | — | — |
| S1_16 | S1 | 50 | — | — |
| S1_7 | S1 | 49 | — | — |
Downloads
| Full SSN (Cytoscape) | GH105_SSN.cys · 16.0 MB |
|---|---|
| Newick | gh105_phylogeny.max999.nwk |
| MUSCLE alignment | gh105_phylogeny.aln.faa |
| Target proteins (FASTA) | gh105_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |