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CE12 CE CE family — see CAZy reference
529
target proteins
458
CGCs
999 / 529
tree leaves
162
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce12_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE12 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE12 | CE | 529 | — | — |
| GH105 | GH | 238 | — | — |
| GH28 | GH | 188 | — | — |
| CE8 | CE | 154 | — | — |
| GH43_10 | GH | 93 | — | — |
| PL1_2 | PL | 86 | — | — |
| GH106 | GH | 49 | — | — |
| PL10_1 | PL | 42 | — | — |
| GH2_11 | GH | 38 | — | — |
| S1_27 | S1 | 34 | — | — |
| PL11 | PL | 33 | — | — |
| GH43_18 | GH | 32 | — | — |
| PL11_1 | PL | 31 | — | — |
| GH42 | GH | 28 | — | — |
| PL1_6 | PL | 27 | — | — |
Downloads
| Full SSN (Cytoscape) | CE12_SSN.cys · 5.5 MB |
|---|---|
| Newick | ce12_phylogeny.max999.nwk |
| MUSCLE alignment | ce12_phylogeny.aln.faa |
| Target proteins (FASTA) | ce12_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |