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PL11 PL PL family — see CAZy reference
193
target proteins
295
CGCs
all
tree leaves
148
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl11_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL11 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL11 | PL | 193 | — | — |
| PL11_1 | PL | 112 | — | — |
| CE12 | CE | 83 | — | — |
| GH105 | GH | 55 | — | — |
| GH28 | GH | 33 | — | — |
| GH106 | GH | 29 | — | — |
| PL26 | PL | 26 | — | — |
| GH42 | GH | 16 | — | — |
| GH115 | GH | 16 | — | — |
| GH2_11 | GH | 16 | — | — |
| GH2_1 | GH | 16 | — | — |
| GH51_1 | GH | 14 | — | — |
| GH43_18 | GH | 13 | — | — |
| PL11_2 | PL | 12 | — | — |
| GH159 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | PL11_SSN.cys · 1.8 MB |
|---|---|
| Newick | pl11_phylogeny.nwk |
| MUSCLE alignment | pl11_phylogeny.aln.faa |
| Target proteins (FASTA) | pl11_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |