↵
GH159 GH GH family — see CAZy reference
79
target proteins
79
CGCs
all
tree leaves
79
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh159_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH159 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH159 | GH | 79 | — | — |
| CE12 | CE | 29 | — | — |
| GH28 | GH | 27 | — | — |
| GH105 | GH | 24 | — | — |
| GH115 | GH | 15 | — | — |
| GH35 | GH | 14 | — | — |
| GH43_18 | GH | 11 | — | — |
| GH43_17 | GH | 11 | — | — |
| GH92 | GH | 10 | — | — |
| S1_4 | S1 | 9 | — | — |
| PL11_1 | PL | 8 | — | — |
| GH106 | GH | 8 | — | — |
| GH43_26 | GH | 7 | — | — |
| GH2_11 | GH | 7 | — | — |
| GH51_1 | GH | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | GH159_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh159_phylogeny.nwk |
| MUSCLE alignment | gh159_phylogeny.aln.faa |
| Target proteins (FASTA) | gh159_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |