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GH92 GH GH family — see CAZy reference
2,865
target proteins
2,185
CGCs
999 / 2,865
tree leaves
289
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh92_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH92 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH92 | GH | 2,865 | — | — |
| GH20 | GH | 334 | — | — |
| GH29 | GH | 210 | — | — |
| GH2_13 | GH | 182 | — | — |
| S1_7 | S1 | 139 | — | — |
| GH125 | GH | 135 | — | — |
| CBM9 | CBM | 135 | — | — |
| GH3 | GH | 133 | — | — |
| GH130_2 | GH | 119 | — | — |
| S1_11 | S1 | 90 | — | — |
| S1_15 | S1 | 82 | — | — |
| CE20 | CE | 76 | — | — |
| GH76 | GH | 73 | — | — |
| S1_4 | S1 | 71 | — | — |
| S1_14 | S1 | 67 | — | — |
Downloads
| Full SSN (Cytoscape) | GH92_SSN.cys · 105.2 MB |
|---|---|
| Newick | gh92_phylogeny.max999.nwk |
| MUSCLE alignment | gh92_phylogeny.aln.faa |
| Target proteins (FASTA) | gh92_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |