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GH29 GH GH family — see CAZy reference
2,524
target proteins
2,155
CGCs
999 / 2,524
tree leaves
333
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh29_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH29 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH29 | GH | 2,524 | — | — |
| GH92 | GH | 244 | — | — |
| S1_16 | S1 | 193 | — | — |
| GH3 | GH | 191 | — | — |
| GH20 | GH | 180 | — | — |
| S1_15 | S1 | 167 | — | — |
| GH117 | GH | 165 | — | — |
| S1_17 | S1 | 156 | — | — |
| S1_11 | S1 | 155 | — | — |
| GH95 | GH | 122 | — | — |
| S1_28 | S1 | 120 | — | — |
| GH141 | GH | 117 | — | — |
| GH2_1 | GH | 101 | — | — |
| S1_8 | S1 | 85 | — | — |
| GH33 | GH | 83 | — | — |
Downloads
| Full SSN (Cytoscape) | GH29_SSN.cys · 60.0 MB |
|---|---|
| Newick | gh29_phylogeny.max999.nwk |
| MUSCLE alignment | gh29_phylogeny.aln.faa |
| Target proteins (FASTA) | gh29_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |