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GH141 GH GH family — see CAZy reference
551
target proteins
517
CGCs
999 / 551
tree leaves
209
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh141_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH141 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH141 | GH | 551 | — | — |
| GH29 | GH | 143 | — | — |
| GH117 | GH | 58 | — | — |
| S1_17 | S1 | 58 | — | — |
| PL40 | PL | 55 | — | — |
| S1_15 | S1 | 50 | — | — |
| GH95 | GH | 48 | — | — |
| GH78 | GH | 41 | — | — |
| S1_11 | S1 | 39 | — | — |
| GH97 | GH | 34 | — | — |
| S1_16 | S1 | 34 | — | — |
| GT4 | GT | 31 | — | — |
| GH28 | GH | 31 | — | — |
| GH88 | GH | 29 | — | — |
| GH3 | GH | 29 | — | — |
Downloads
| Full SSN (Cytoscape) | GH141_SSN.cys · 2.1 MB |
|---|---|
| Newick | gh141_phylogeny.max999.nwk |
| MUSCLE alignment | gh141_phylogeny.aln.faa |
| Target proteins (FASTA) | gh141_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |