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GH97 GH GH family — see CAZy reference
1,412
target proteins
1,379
CGCs
999 / 1,412
tree leaves
281
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh97_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH97 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH97 | GH | 1,412 | — | — |
| GH13_46 | GH | 190 | — | — |
| GH13_23 | GH | 180 | — | — |
| GH13_48 | GH | 166 | — | — |
| GH3 | GH | 161 | — | — |
| GH65 | GH | 157 | — | — |
| GH13_47 | GH | 122 | — | — |
| GH92 | GH | 113 | — | — |
| CE1 | CE | 109 | — | — |
| GH13 | GH | 102 | — | — |
| GH13_38 | GH | 99 | — | — |
| GH29 | GH | 99 | — | — |
| GH13_19 | GH | 96 | — | — |
| GH31 | GH | 85 | — | — |
| GH95 | GH | 80 | — | — |
Downloads
| Full SSN (Cytoscape) | GH97_SSN.cys · 43.2 MB |
|---|---|
| Newick | gh97_phylogeny.max999.nwk |
| MUSCLE alignment | gh97_phylogeny.aln.faa |
| Target proteins (FASTA) | gh97_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |