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GH13_19 GH GH family — see CAZy reference
617
target proteins
617
CGCs
999 / 617
tree leaves
101
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_19_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_19 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_19 | GH | 617 | — | — |
| GH65 | GH | 198 | — | — |
| GH13_46 | GH | 182 | — | — |
| GH13_47 | GH | 145 | — | — |
| GH31 | GH | 140 | — | — |
| S1_7 | S1 | 128 | — | — |
| GH13_38 | GH | 126 | — | — |
| GH97 | GH | 96 | — | — |
| GH13_48 | GH | 83 | — | — |
| GH17 | GH | 33 | — | — |
| CE1 | CE | 31 | — | — |
| GH16_3 | GH | 28 | — | — |
| GH13_23 | GH | 22 | — | — |
| GH77 | GH | 22 | — | — |
| GH3 | GH | 20 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_19_SSN.cys · 17.3 MB |
|---|---|
| Newick | gh13_19_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_19_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_19_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |