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GH13_48 GH GH family — see CAZy reference
1,296
target proteins
1,279
CGCs
999 / 1,296
tree leaves
165
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_48_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_48 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_48 | GH | 1,296 | — | — |
| GH65 | GH | 406 | — | — |
| GH13_46 | GH | 304 | — | — |
| GH13_47 | GH | 225 | — | — |
| GH97 | GH | 162 | — | — |
| GH13 | GH | 162 | — | — |
| GH31 | GH | 107 | — | — |
| GH13_19 | GH | 83 | — | — |
| GH13_23 | GH | 73 | — | — |
| GH13_45 | GH | 64 | — | — |
| GT35 | GT | 52 | — | — |
| GH13_7 | GH | 44 | — | — |
| S1_2 | S1 | 40 | — | — |
| GT5 | GT | 38 | — | — |
| GH31_1 | GH | 38 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_48_SSN.cys · 47.2 MB |
|---|---|
| Newick | gh13_48_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_48_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_48_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |