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GH13_7 GH GH family — see CAZy reference
190
target proteins
190
CGCs
all
tree leaves
44
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_7_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_7 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_7 | GH | 190 | — | — |
| GH13_46 | GH | 50 | — | — |
| GH65 | GH | 46 | — | — |
| GH13_48 | GH | 44 | — | — |
| GH13_47 | GH | 15 | — | — |
| GH147 | GH | 13 | — | — |
| GH31_1 | GH | 13 | — | — |
| GH31 | GH | 12 | — | — |
| S1_4 | S1 | 10 | — | — |
| GH97 | GH | 6 | — | — |
| GT4 | GT | 6 | — | — |
| GH2_6 | GH | 4 | — | — |
| S1_15 | S1 | 4 | — | — |
| S1_16 | S1 | 4 | — | — |
| S1_2 | S1 | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_7_SSN.cys · 1.0 MB |
|---|---|
| Newick | gh13_7_phylogeny.nwk |
| MUSCLE alignment | gh13_7_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_7_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |