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GH31_1 GH GH family — see CAZy reference
653
target proteins
651
CGCs
999 / 653
tree leaves
114
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh31_1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH31_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH31_1 | GH | 653 | — | — |
| GH13_9 | GH | 173 | — | — |
| GT5 | GT | 120 | — | — |
| GH13_3 | GH | 72 | — | — |
| S1_97 | S1 | 39 | — | — |
| GH13_48 | GH | 39 | — | — |
| GH13_20 | GH | 38 | — | — |
| GH13_47 | GH | 31 | — | — |
| GH13 | GH | 29 | — | — |
| GH13_36 | GH | 27 | — | — |
| S1_2 | S1 | 17 | — | — |
| GH13_46 | GH | 16 | — | — |
| GH13_45 | GH | 14 | — | — |
| GT4 | GT | 14 | — | — |
| GH13_31 | GH | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | GH31_1_SSN.cys · 10.8 MB |
|---|---|
| Newick | gh31_1_phylogeny.max999.nwk |
| MUSCLE alignment | gh31_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh31_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |