GH13 GH GH family — see CAZy reference

871

target proteins

18,575

CGCs

999 / 871

tree leaves

412

co-occurring families

Overview

Class	GH
Annotation source	dbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN source	Subset of `global_ssn.sqlite` (DIAMOND e ≤ 1e-30)
Tree input	MUSCLE-super5 alignment of `gh13_proteins.faa` (subsampled to 999 sequences, seed 42)
Tree method	FastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Hosted on Zenodo · 1.03 GB

Subset of the global SSN restricted to proteins from GH13 CGCs.

SSN
.cys

GH13_SSN.cys

Full GH13 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.

Hosted externally on Zenodo · 1.03 GB. Cytoscape needs roughly 15× this in RAM to open it — recommended only for HPC / workstations with ≥16 GB memory.

Open on Zenodo

Too large for a laptop. This file is hosted on Zenodo; we suggest drilling into a class- or order-level page for a workable session, or downloading and opening on an HPC node.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

Co-occurring subfamilies first 15 of 412 · .tsv

Subfamily	Class	CGCs	# genes	# SSN clusters
GH13_9	GH	2,966	—	—
GH13_11	GH	2,415	—	—
GH13_23	GH	2,309	—	—
GH13_18	GH	1,783	—	—
GH77	GH	1,312	—	—
GH13_48	GH	1,296	—	—
GT35	GT	1,293	—	—
GT5	GT	1,188	—	—
GH13_20	GH	1,091	—	—
GH13_16	GH	1,079	—	—
GH13_31	GH	1,048	—	—
GH13_46	GH	1,046	—	—
GH65	GH	880	—	—
GH13	GH	871	—	—
GT81	GT	821	—	—

Downloads

Full SSN (Cytoscape, Zenodo)	`GH13_SSN.cys` · 1.03 GB · hosted externally
Newick	`gh13_phylogeny.max999.nwk`
MUSCLE alignment	`gh13_phylogeny.aln.faa`
Target proteins (FASTA)	`gh13_proteins.faa`
All proteins in associated CGCs	`sequences.faa`
CGC list	`cgcs.txt`
Co-occurring families	`ranked_families.tsv`