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GH13_20 GH GH family — see CAZy reference
1,091
target proteins
1,077
CGCs
999 / 1,091
tree leaves
152
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_20_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_20 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_20 | GH | 1,091 | — | — |
| GH77 | GH | 96 | — | — |
| GH13_31 | GH | 77 | — | — |
| GH13_45 | GH | 58 | — | — |
| GH13_16 | GH | 57 | — | — |
| GT35 | GT | 48 | — | — |
| GH13 | GH | 44 | — | — |
| GT5 | GT | 40 | — | — |
| GH31_1 | GH | 38 | — | — |
| GH65 | GH | 35 | — | — |
| GH13_48 | GH | 32 | — | — |
| GH13_47 | GH | 31 | — | — |
| S1_2 | S1 | 31 | — | — |
| GH13_14 | GH | 30 | — | — |
| GH57_2 | GH | 28 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_20_SSN.cys · 26.1 MB |
|---|---|
| Newick | gh13_20_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_20_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_20_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |