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GH57_2 GH GH family — see CAZy reference
515
target proteins
515
CGCs
999 / 515
tree leaves
56
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh57_2_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH57_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH57_2 | GH | 515 | — | — |
| GT35 | GT | 206 | — | — |
| GH77 | GH | 200 | — | — |
| GT5 | GT | 168 | — | — |
| GH13_9 | GH | 128 | — | — |
| GH13 | GH | 67 | — | — |
| GH57_1 | GH | 51 | — | — |
| GH13_20 | GH | 29 | — | — |
| GH57_5 | GH | 24 | — | — |
| S1_2 | S1 | 21 | — | — |
| GT4 | GT | 9 | — | — |
| S1_97 | S1 | 8 | — | — |
| S1_27 | S1 | 7 | — | — |
| GH13_30 | GH | 5 | — | — |
| GT81 | GT | 5 | — | — |
Downloads
| Full SSN (Cytoscape) | GH57_2_SSN.cys · 7.8 MB |
|---|---|
| Newick | gh57_2_phylogeny.max999.nwk |
| MUSCLE alignment | gh57_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh57_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |