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GH13_30 GH GH family — see CAZy reference
578
target proteins
559
CGCs
999 / 578
tree leaves
81
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_30_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_30 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_30 | GH | 578 | — | — |
| GH13_32 | GH | 46 | — | — |
| GH87 | GH | 41 | — | — |
| GH13_21 | GH | 41 | — | — |
| GH13_13 | GH | 36 | — | — |
| S1_8 | S1 | 17 | — | — |
| GH77 | GH | 11 | — | — |
| S1_6 | S1 | 10 | — | — |
| GH3 | GH | 10 | — | — |
| S1_5 | S1 | 10 | — | — |
| GT2 | GT | 10 | — | — |
| S1_97 | S1 | 9 | — | — |
| GH13_9 | GH | 8 | — | — |
| GT4 | GT | 8 | — | — |
| GT35 | GT | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_30_SSN.cys · 10.0 MB |
|---|---|
| Newick | gh13_30_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_30_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_30_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |