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Home · Families · GH · GH3

GH3 GH GH family — see CAZy reference

13,331
target proteins
12,844
CGCs
999 / 13,331
tree leaves
438
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh3_proteins.faa (subsampled to 999 sequences, seed 42)
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Hosted on Zenodo · 837.0 MB

Subset of the global SSN restricted to proteins from GH3 CGCs.

SSN
.cys
GH3_SSN.cys
Full GH3 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Hosted externally on Zenodo · 837.0 MB. Cytoscape needs roughly 15× this in RAM to open it — recommended only for HPC / workstations with ≥13 GB memory.
Open on Zenodo
Too large for a laptop. This file is hosted on Zenodo; we suggest drilling into a class- or order-level page for a workable session, or downloading and opening on an HPC node.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH3 host-group violin

Co-occurring subfamilies first 15 of 438 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH3GH13,331——
GH16_3GH1,083——
GT4GT888——
GH144GH595——
GH171GH342——
GH17GH315——
S1_8S1312——
GH1GH292——
GH10GH290——
S1_11S1282——
CBM102CBM276——
GH29GH243——
GT2GT232——
S1_7S1217——
GH30_1GH206——

Downloads

Full SSN (Cytoscape, Zenodo)GH3_SSN.cys · 0.82 GB · hosted externally
Newickgh3_phylogeny.max999.nwk
MUSCLE alignmentgh3_phylogeny.aln.faa
Target proteins (FASTA)gh3_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv