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GH171 GH GH family — see CAZy reference
2,609
target proteins
2,563
CGCs
999 / 2,609
tree leaves
136
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh171_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH171 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH171 | GH | 2,609 | — | — |
| GH3 | GH | 371 | — | — |
| GT2 | GT | 158 | — | — |
| S1_8 | S1 | 82 | — | — |
| GH18 | GH | 76 | — | — |
| S1_2 | S1 | 36 | — | — |
| GT119 | GT | 35 | — | — |
| S1_9 | S1 | 35 | — | — |
| S1_7 | S1 | 34 | — | — |
| GH20 | GH | 31 | — | — |
| CE9 | CE | 27 | — | — |
| GT4 | GT | 21 | — | — |
| S1_37 | S1 | 20 | — | — |
| GH23 | GH | 19 | — | — |
| S1_15 | S1 | 16 | — | — |
Downloads
| Full SSN (Cytoscape) | GH171_SSN.cys · 95.0 MB |
|---|---|
| Newick | gh171_phylogeny.max999.nwk |
| MUSCLE alignment | gh171_phylogeny.aln.faa |
| Target proteins (FASTA) | gh171_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |