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GH18 GH GH family — see CAZy reference
2,342
target proteins
2,130
CGCs
999 / 2,342
tree leaves
230
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh18_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH18 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH18 | GH | 2,342 | — | — |
| AA10 | AA | 121 | — | — |
| GH20 | GH | 86 | — | — |
| GH171 | GH | 82 | — | — |
| GH3 | GH | 70 | — | — |
| GH92 | GH | 70 | — | — |
| GT2 | GT | 48 | — | — |
| GH16_3 | GH | 43 | — | — |
| GH29 | GH | 40 | — | — |
| S1_6 | S1 | 38 | — | — |
| S1_11 | S1 | 37 | — | — |
| S1_9 | S1 | 31 | — | — |
| CBM9 | CBM | 30 | — | — |
| GT51 | GT | 28 | — | — |
| CE9 | CE | 24 | — | — |
Downloads
| Full SSN (Cytoscape) | GH18_SSN.cys · 19.3 MB |
|---|---|
| Newick | gh18_phylogeny.max999.nwk |
| MUSCLE alignment | gh18_phylogeny.aln.faa |
| Target proteins (FASTA) | gh18_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |