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S1_9 S1 S1 family — see CAZy reference
1,030
target proteins
1,020
CGCs
999 / 1,030
tree leaves
200
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_9_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_9 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_9 | S1 | 1,030 | — | — |
| CE9 | CE | 409 | — | — |
| GH20 | GH | 257 | — | — |
| GH3 | GH | 204 | — | — |
| GH92 | GH | 114 | — | — |
| S1_11 | S1 | 80 | — | — |
| CBM9 | CBM | 53 | — | — |
| GH29 | GH | 52 | — | — |
| GH18 | GH | 42 | — | — |
| GH171 | GH | 41 | — | — |
| S1_37 | S1 | 37 | — | — |
| GH130_2 | GH | 34 | — | — |
| CE20 | CE | 33 | — | — |
| S1_27 | S1 | 29 | — | — |
| S1_8 | S1 | 29 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_9_SSN.cys · 25.3 MB |
|---|---|
| Newick | s1_9_phylogeny.max999.nwk |
| MUSCLE alignment | s1_9_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_9_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |