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S1_37 S1 S1 family — see CAZy reference
1,388
target proteins
1,382
CGCs
999 / 1,388
tree leaves
194
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_37_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_37 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_37 | S1 | 1,388 | — | — |
| GT19 | GT | 330 | — | — |
| GT51 | GT | 132 | — | — |
| GT2 | GT | 130 | — | — |
| GT4 | GT | 116 | — | — |
| GH3 | GH | 102 | — | — |
| CE11 | CE | 95 | — | — |
| AA3_2 | AA | 64 | — | — |
| S1_25 | S1 | 44 | — | — |
| S1_9 | S1 | 37 | — | — |
| GT83 | GT | 28 | — | — |
| GH20 | GH | 28 | — | — |
| GT30 | GT | 24 | — | — |
| CE9 | CE | 22 | — | — |
| GH171 | GH | 21 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_37_SSN.cys · 36.7 MB |
|---|---|
| Newick | s1_37_phylogeny.max999.nwk |
| MUSCLE alignment | s1_37_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_37_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |