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S1_25 S1 S1 family — see CAZy reference
420
target proteins
415
CGCs
all
tree leaves
189
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_25_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_25 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_25 | S1 | 420 | — | — |
| GH29 | GH | 91 | — | — |
| GT51 | GT | 77 | — | — |
| GH78 | GH | 56 | — | — |
| S1_37 | S1 | 44 | — | — |
| S1_17 | S1 | 44 | — | — |
| S1_8 | S1 | 38 | — | — |
| GH3 | GH | 34 | — | — |
| S1_16 | S1 | 33 | — | — |
| GH117 | GH | 32 | — | — |
| S1_15 | S1 | 31 | — | — |
| S1_28 | S1 | 27 | — | — |
| S1_7 | S1 | 26 | — | — |
| PL43 | PL | 23 | — | — |
| GH28 | GH | 23 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_25_SSN.cys · 2.3 MB |
|---|---|
| Newick | s1_25_phylogeny.nwk |
| MUSCLE alignment | s1_25_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_25_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |