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GH28 GH GH family — see CAZy reference
975
target proteins
870
CGCs
999 / 975
tree leaves
252
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh28_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH28 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH28 | GH | 975 | — | — |
| GH105 | GH | 350 | — | — |
| CE12 | CE | 191 | — | — |
| CE8 | CE | 186 | — | — |
| PL1_2 | PL | 153 | — | — |
| GH43_10 | GH | 94 | — | — |
| GH106 | GH | 75 | — | — |
| GH29 | GH | 72 | — | — |
| GH78 | GH | 55 | — | — |
| GH92 | GH | 55 | — | — |
| GH2_1 | GH | 51 | — | — |
| GH117 | GH | 48 | — | — |
| GH95 | GH | 47 | — | — |
| S1_8 | S1 | 46 | — | — |
| GH115 | GH | 43 | — | — |
Downloads
| Full SSN (Cytoscape) | GH28_SSN.cys · 13.2 MB |
|---|---|
| Newick | gh28_phylogeny.max999.nwk |
| MUSCLE alignment | gh28_phylogeny.aln.faa |
| Target proteins (FASTA) | gh28_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |