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GH115 GH GH family — see CAZy reference
317
target proteins
313
CGCs
all
tree leaves
164
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh115_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH115 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH115 | GH | 317 | — | — |
| GH10 | GH | 140 | — | — |
| GH3 | GH | 100 | — | — |
| GH43_12 | GH | 72 | — | — |
| GH67 | GH | 60 | — | — |
| CE20 | CE | 60 | — | — |
| GH43_1 | GH | 56 | — | — |
| GH92 | GH | 54 | — | — |
| GH28 | GH | 50 | — | — |
| CE1 | CE | 49 | — | — |
| GH105 | GH | 38 | — | — |
| GH43_10 | GH | 29 | — | — |
| CE12 | CE | 29 | — | — |
| GH97 | GH | 26 | — | — |
| GH2_1 | GH | 26 | — | — |
Downloads
| Full SSN (Cytoscape) | GH115_SSN.cys · 3.3 MB |
|---|---|
| Newick | gh115_phylogeny.nwk |
| MUSCLE alignment | gh115_phylogeny.aln.faa |
| Target proteins (FASTA) | gh115_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |