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GH43_10 GH GH family — see CAZy reference
339
target proteins
337
CGCs
all
tree leaves
173
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_10_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_10 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_10 | GH | 339 | — | — |
| CE8 | CE | 125 | — | — |
| GH28 | GH | 122 | — | — |
| CE1 | CE | 117 | — | — |
| GH105 | GH | 114 | — | — |
| CE12 | CE | 104 | — | — |
| GH10 | GH | 76 | — | — |
| GH3 | GH | 64 | — | — |
| PL1_2 | PL | 64 | — | — |
| GH43_12 | GH | 61 | — | — |
| GH95 | GH | 57 | — | — |
| GH43_29 | GH | 53 | — | — |
| GH97 | GH | 51 | — | — |
| CE20 | CE | 34 | — | — |
| GH78 | GH | 33 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_10_SSN.cys · 4.6 MB |
|---|---|
| Newick | gh43_10_phylogeny.nwk |
| MUSCLE alignment | gh43_10_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_10_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |