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GH95 GH GH family — see CAZy reference
1,059
target proteins
1,013
CGCs
999 / 1,059
tree leaves
283
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh95_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH95 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH95 | GH | 1,059 | — | — |
| GH29 | GH | 174 | — | — |
| GH3 | GH | 160 | — | — |
| CE1 | CE | 121 | — | — |
| GH97 | GH | 95 | — | — |
| S1_15 | S1 | 84 | — | — |
| CE20 | CE | 83 | — | — |
| S1_16 | S1 | 80 | — | — |
| GH10 | GH | 63 | — | — |
| GH28 | GH | 61 | — | — |
| GH43_10 | GH | 59 | — | — |
| GH42 | GH | 58 | — | — |
| GH43_12 | GH | 58 | — | — |
| PL1_2 | PL | 58 | — | — |
| GH43_29 | GH | 55 | — | — |
Downloads
| Full SSN (Cytoscape) | GH95_SSN.cys · 18.5 MB |
|---|---|
| Newick | gh95_phylogeny.max999.nwk |
| MUSCLE alignment | gh95_phylogeny.aln.faa |
| Target proteins (FASTA) | gh95_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |