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GH42 GH GH family — see CAZy reference
1,246
target proteins
1,232
CGCs
999 / 1,246
tree leaves
222
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh42_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH42 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH42 | GH | 1,246 | — | — |
| GH36 | GH | 233 | — | — |
| GH3 | GH | 122 | — | — |
| GH53 | GH | 100 | — | — |
| GH4 | GH | 80 | — | — |
| GH95 | GH | 58 | — | — |
| GH31_3 | GH | 49 | — | — |
| S1_6 | S1 | 45 | — | — |
| CE12 | CE | 44 | — | — |
| GH1 | GH | 42 | — | — |
| S1_4 | S1 | 40 | — | — |
| GH105 | GH | 29 | — | — |
| GH29 | GH | 29 | — | — |
| GH31_4 | GH | 25 | — | — |
| GH12 | GH | 25 | — | — |
Downloads
| Full SSN (Cytoscape) | GH42_SSN.cys · 26.7 MB |
|---|---|
| Newick | gh42_phylogeny.max999.nwk |
| MUSCLE alignment | gh42_phylogeny.aln.faa |
| Target proteins (FASTA) | gh42_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |