↵
GH53 GH GH family — see CAZy reference
505
target proteins
455
CGCs
999 / 505
tree leaves
147
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh53_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH53 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH53 | GH | 505 | — | — |
| GH42 | GH | 83 | — | — |
| GH2_1 | GH | 60 | — | — |
| GH2_6 | GH | 39 | — | — |
| GH147 | GH | 37 | — | — |
| GH13_46 | GH | 27 | — | — |
| GH13_47 | GH | 24 | — | — |
| GH35 | GH | 24 | — | — |
| GH65 | GH | 22 | — | — |
| S1_4 | S1 | 17 | — | — |
| GH13_48 | GH | 16 | — | — |
| GH31 | GH | 15 | — | — |
| GH3 | GH | 15 | — | — |
| GH97 | GH | 13 | — | — |
| GH26 | GH | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | GH53_SSN.cys · 4.7 MB |
|---|---|
| Newick | gh53_phylogeny.max999.nwk |
| MUSCLE alignment | gh53_phylogeny.aln.faa |
| Target proteins (FASTA) | gh53_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |