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GH35 GH GH family — see CAZy reference
492
target proteins
472
CGCs
999 / 492
tree leaves
207
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh35_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH35 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH35 | GH | 492 | — | — |
| GH29 | GH | 64 | — | — |
| GH3 | GH | 62 | — | — |
| GH31_4 | GH | 42 | — | — |
| GH105 | GH | 27 | — | — |
| GH95 | GH | 26 | — | — |
| GH53 | GH | 25 | — | — |
| CE12 | CE | 23 | — | — |
| GH28 | GH | 23 | — | — |
| CE20 | CE | 23 | — | — |
| GH20 | GH | 21 | — | — |
| GH92 | GH | 21 | — | — |
| GH144 | GH | 20 | — | — |
| GH42 | GH | 20 | — | — |
| GH51_1 | GH | 18 | — | — |
Downloads
| Full SSN (Cytoscape) | GH35_SSN.cys · 2.1 MB |
|---|---|
| Newick | gh35_phylogeny.max999.nwk |
| MUSCLE alignment | gh35_phylogeny.aln.faa |
| Target proteins (FASTA) | gh35_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |