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GH31_4 GH GH family — see CAZy reference
268
target proteins
259
CGCs
all
tree leaves
159
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh31_4_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH31_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH31_4 | GH | 268 | — | — |
| GH3 | GH | 89 | — | — |
| GH95 | GH | 54 | — | — |
| GH35 | GH | 47 | — | — |
| CE20 | CE | 34 | — | — |
| CE1 | CE | 33 | — | — |
| GH97 | GH | 33 | — | — |
| GH29 | GH | 31 | — | — |
| GH43_29 | GH | 26 | — | — |
| GH42 | GH | 25 | — | — |
| GH43_12 | GH | 25 | — | — |
| GH5_4 | GH | 25 | — | — |
| GH10 | GH | 22 | — | — |
| PL43 | PL | 21 | — | — |
| GH2_1 | GH | 20 | — | — |
Downloads
| Full SSN (Cytoscape) | GH31_4_SSN.cys · 1.8 MB |
|---|---|
| Newick | gh31_4_phylogeny.nwk |
| MUSCLE alignment | gh31_4_phylogeny.aln.faa |
| Target proteins (FASTA) | gh31_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |