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PL43 PL PL family — see CAZy reference
84
target proteins
56
CGCs
all
tree leaves
73
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl43_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL43 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL43 | PL | 84 | — | — |
| PL40 | PL | 31 | — | — |
| GH29 | GH | 20 | — | — |
| GH88 | GH | 18 | — | — |
| S1_17 | S1 | 18 | — | — |
| GH95 | GH | 17 | — | — |
| GH141 | GH | 13 | — | — |
| CBM6 | CBM | 13 | — | — |
| S1_23 | S1 | 12 | — | — |
| GH117 | GH | 11 | — | — |
| CE20 | CE | 10 | — | — |
| GH39 | GH | 9 | — | — |
| GH3 | GH | 9 | — | — |
| GH30_2 | GH | 8 | — | — |
| GH97 | GH | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | PL43_SSN.cys · 0.2 MB |
|---|---|
| Newick | pl43_phylogeny.nwk |
| MUSCLE alignment | pl43_phylogeny.aln.faa |
| Target proteins (FASTA) | pl43_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |