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GH30_2 GH GH family — see CAZy reference
79
target proteins
78
CGCs
all
tree leaves
94
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh30_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH30_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH30_2 | GH | 79 | — | — |
| GH3 | GH | 42 | — | — |
| GH29 | GH | 41 | — | — |
| S1_11 | S1 | 25 | — | — |
| GH92 | GH | 21 | — | — |
| GH141 | GH | 20 | — | — |
| S1_15 | S1 | 20 | — | — |
| PL40 | PL | 15 | — | — |
| GH39 | GH | 14 | — | — |
| GH20 | GH | 13 | — | — |
| S1_14 | S1 | 13 | — | — |
| GH95 | GH | 13 | — | — |
| S1_17 | S1 | 13 | — | — |
| PL43 | PL | 12 | — | — |
| S1_28 | S1 | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | GH30_2_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh30_2_phylogeny.nwk |
| MUSCLE alignment | gh30_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh30_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |