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S1_28 S1 S1 family — see CAZy reference
307
target proteins
293
CGCs
all
tree leaves
153
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_28_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_28 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_28 | S1 | 307 | — | — |
| GH29 | GH | 163 | — | — |
| GH117 | GH | 57 | — | — |
| S1_11 | S1 | 51 | — | — |
| S1_15 | S1 | 48 | — | — |
| S1_17 | S1 | 44 | — | — |
| GH20 | GH | 37 | — | — |
| GH28 | GH | 35 | — | — |
| S1_8 | S1 | 33 | — | — |
| GH95 | GH | 30 | — | — |
| GH3 | GH | 30 | — | — |
| GH33 | GH | 29 | — | — |
| S1_16 | S1 | 25 | — | — |
| S1_7 | S1 | 25 | — | — |
| S1_25 | S1 | 24 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_28_SSN.cys · 1.7 MB |
|---|---|
| Newick | s1_28_phylogeny.nwk |
| MUSCLE alignment | s1_28_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_28_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |