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GH33 GH GH family — see CAZy reference
2,081
target proteins
1,972
CGCs
999 / 2,081
tree leaves
229
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh33_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH33 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH33 | GH | 2,081 | — | — |
| S1_7 | S1 | 153 | — | — |
| S1_16 | S1 | 130 | — | — |
| GH29 | GH | 127 | — | — |
| S1_8 | S1 | 105 | — | — |
| GH20 | GH | 100 | — | — |
| CE20 | CE | 75 | — | — |
| S1_17 | S1 | 66 | — | — |
| GH92 | GH | 64 | — | — |
| S1_11 | S1 | 58 | — | — |
| GH165 | GH | 56 | — | — |
| GH78 | GH | 53 | — | — |
| PL1_2 | PL | 49 | — | — |
| S1_20 | S1 | 46 | — | — |
| S1_14 | S1 | 37 | — | — |
Downloads
| Full SSN (Cytoscape) | GH33_SSN.cys · 17.8 MB |
|---|---|
| Newick | gh33_phylogeny.max999.nwk |
| MUSCLE alignment | gh33_phylogeny.aln.faa |
| Target proteins (FASTA) | gh33_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |